STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0348Possible Spectrin repeat; Alternative locus ID: PMED4_03661. (79 aa)    
Predicted Functional Partners:
PMM0861
Possible Virion host shutoff protein; Alternative locus ID: PMED4_09701.
   
  
 0.730
PMM1400
Possible Hemagglutinin-neuraminidase; Alternative locus ID: PMED4_15971.
   
  
 0.724
PMM1365
Possible MATH domain; Alternative locus ID: PMED4_15351.
   
  
 0.722
PMM0349
Class I peptide chain release factor; Alternative locus ID: PMED4_03671.
  
    0.616
PMM0347
Conserved hypothetical; Alternative locus ID: PMED4_03641.
  
    0.525
PMM1819
Conserved hypothetical protein; Alternative locus ID: PMED4_03651.
       0.507
PMM1462
Conserved hypothetical protein; Alternative locus ID: PMED4_16711.
   
  
 0.451
hli21
Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219; Alternative locus ID: PMED4_07551.
   
  
 0.423
hli17
Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219; Alternative locus ID: PMED4_09091.
   
  
 0.420
tatA-2
mttA/Hcf106 family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
  
 0.403
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.