STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0397Possible Glycosyl transferase, group 1; Alternative locus ID: PMED4_04381. (388 aa)    
Predicted Functional Partners:
PMM1114
Conserved hypothetical protein; Alternative locus ID: PMED4_12601.
  
    0.711
PMM0403
Conserved hypothetical protein; Alternative locus ID: PMED4_04441.
 
    0.704
PMM0794
Conserved hypothetical protein; Alternative locus ID: PMED4_08801.
  
  
 0.700
recO
Possible Recombination protein O (RecO); Involved in DNA repair and RecF pathway recombination.
  
    0.689
PMM0486
Conserved hypothetical protein; Alternative locus ID: PMED4_05351.
  
     0.689
lrtA
Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.661
PMM0399
Putative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
    0.660
PMM0254
Conserved hypothetical protein; Alternative locus ID: PMED4_02591.
  
    0.643
PMM1178
Glycosyl transferases group 1; Alternative locus ID: PMED4_13431.
  
    0.628
PMM0502
Conserved hypothetical protein; Alternative locus ID: PMED4_05511.
  
    0.581
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.