Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PMM0423Conserved hypothetical protein; Alternative locus ID: PMED4_04681. (130 aa)    
Predicted Functional Partners:
PMM0424
Conserved hypothetical protein; Alternative locus ID: PMED4_04691.
 
    0.840
PMM0425
Conserved hypothetical protein; Alternative locus ID: PMED4_04701.
       0.593
PMM1847
Conserved hypothetical protein; Alternative locus ID: PMED4_04671.
       0.554
psbP
Photosystem II oxygen evolving complex protein PsbP; Alternative locus ID: PMED4_12441.
  
     0.510
PMM0589
Conserved hypothetical; Alternative locus ID: PMED4_06381.
  
     0.490
PMM0296
Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
     0.467
trmH
tRNA/rRNA methyltransferase (SpoU); Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.450
PMM0679
Putative transcripton factor; Alternative locus ID: PMED4_07351.
  
     0.429
thf1
Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis.
  
     0.404
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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