STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0434Possible ABC transporter, ATP binding protein; Alternative locus ID: PMED4_04811. (228 aa)    
Predicted Functional Partners:
PMM0913
Possible ABC transporter; Alternative locus ID: PMED4_10241.
 
 0.994
PMM1139
Possible membrane fusion protein; Alternative locus ID: PMED4_12971; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.883
ndhB
Putative NADH dehydrogenase (complex I) subunit (chain 2); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
    0.811
PMM1099
ABC transporter, multidrug efflux family; Alternative locus ID: PMED4_12451.
 
 
   
0.801
PMM0561
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_06101.
 
 
   
0.793
PMM0370
Putative cyanate ABC transporter, substrate binding protein; Alternative locus ID: PMED4_04031.
 
 
  
 0.750
PMM0749
ABC-transporter, membrane spanning component; Alternative locus ID: PMED4_08341.
  
 
 0.738
PMM0976
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_10921.
 
 
   
0.713
PMM0421
Putative ABC transporter, oligopeptides; Alternative locus ID: PMED4_04651.
 
 
  
 0.678
urtE
Putative ATP-binding subunit of urea ABC transport system; Citation: Valladares, A, ML Montesinos, A. Herrero, E. Flores (2002) Mol. Microbiol. 43:703-715; Alternative locus ID: PMED4_10861.
 
 
   
0.662
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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