STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0529Conserved hypothetical protein; Alternative locus ID: PMED4_05781. (301 aa)    
Predicted Functional Partners:
rps1b,
30S ribosomal protein S1 homolog B, putative Nbp1; Citation: Sugita, C., Sugiura, M. & Sugita, M. (2000) Mol. Gen. Genet. 263:655-663; Alternative locus ID: PMED4_05791.
  
    0.831
PMM0528
DUF152; Alternative locus ID: PMED4_05771; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.823
rub
Probable rubredoxin; Alternative locus ID: PMED4_03001.
  
    0.783
PMM0680
Conserved hypothetical protein; Alternative locus ID: PMED4_07361.
  
    0.777
PMM0101
Conserved hypothetical protein; Alternative locus ID: PMED4_01061.
  
    0.776
PMM0296
Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
    0.776
PMM1185
Conserved hypothetical protein; Alternative locus ID: PMED4_13501.
  
    0.775
PMM0620
Conserved hypothetical protein; Alternative locus ID: PMED4_06691.
  
     0.771
PMM0944
Conserved hypothetical protein; Alternative locus ID: PMED4_10551.
  
    0.771
PMM0061
YGGT family, conserved hypothetical integral membrane protein; Alternative locus ID: PMED4_00631.
  
    0.770
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.