STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0535Putative short-chain dehydrogenase; Alternative locus ID: PMED4_05841; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (235 aa)    
Predicted Functional Partners:
accA
acetyl-CoA carboxylase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
  
    0.829
PMM0533
Conserved hypothetical protein; Alternative locus ID: PMED4_05821.
  
    0.828
PMM0632
Short-chain dehydrogenase/reductase (SDR) superfamily; Alternative locus ID: PMED4_06821.
  
    0.771
PMM0532
Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes.
       0.633
PMM1361
Short-chain dehydrogenase/reductase (SDR) superfamily; Alternative locus ID: PMED4_15301.
  
 
 0.628
folE
Putative GTP cyclohydrolase I; Citation: Katzenmeier et al. (1991) Biol. Chem. Hoppe-Seyler 372:991-997; Alternative locus ID: PMED4_05851.
       0.602
PMM0531
Creatininase; Alternative locus ID: PMED4_05801.
       0.510
PMM0449
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_04961.
  
  
 0.461
rps1b,
30S ribosomal protein S1 homolog B, putative Nbp1; Citation: Sugita, C., Sugiura, M. & Sugita, M. (2000) Mol. Gen. Genet. 263:655-663; Alternative locus ID: PMED4_05791.
       0.436
PMM0827
ABC transporter, possibly multidrug efflux; Alternative locus ID: PMED4_09211.
  
     0.421
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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