STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoS2Carboxysome shell protein CsoS2; Alternative locus ID: PMED4_06011. (765 aa)    
Predicted Functional Partners:
csoS3
Carboxysome shell protein CsoS3; Alternative locus ID: PMED4_06021.
 
  
 0.995
rbcS,
Ribulose bisphosphate carboxylase, small chain; Alternative locus ID: PMED4_06001.
 
  
 0.965
PMM0554
Putative carboxysome peptide A; Alternative locus ID: PMED4_06031.
 
    0.960
PMM0555
Putative carboxysome peptide B; Alternative locus ID: PMED4_06041.
 
    0.941
csoS1
Carboxysome shell protein CsoS1; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
  
 0.936
PMM0547
Conserved hypothetical protein; Alternative locus ID: PMED4_05961.
 
   
 0.917
rbcL,
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 0.902
PMM0310
Carbohydrate kinase, FGGY family; Alternative locus ID: PMED4_03161.
  
    0.736
PMM1389
Possible Trypsin; Alternative locus ID: PMED4_15841.
  
     0.713
PMM0556
Conserved hypothetical protein; Alternative locus ID: PMED4_06051.
       0.592
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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