Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
csoS3Carboxysome shell protein CsoS3; Alternative locus ID: PMED4_06021. (509 aa)    
Predicted Functional Partners:
csoS2
Carboxysome shell protein CsoS2; Alternative locus ID: PMED4_06011.
 
  
 0.993
rbcS,
Ribulose bisphosphate carboxylase, small chain; Alternative locus ID: PMED4_06001.
 
 
 0.987
rbcL,
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
 
 
 0.969
PMM0554
Putative carboxysome peptide A; Alternative locus ID: PMED4_06031.
 
    0.957
PMM0555
Putative carboxysome peptide B; Alternative locus ID: PMED4_06041.
 
    0.937
PMM0547
Conserved hypothetical protein; Alternative locus ID: PMED4_05961.
 
     0.782
csoS1
Carboxysome shell protein CsoS1; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
   
 0.777
PMM0310
Carbohydrate kinase, FGGY family; Alternative locus ID: PMED4_03161.
  
    0.741
PMM1389
Possible Trypsin; Alternative locus ID: PMED4_15841.
  
     0.641
PMM0556
Conserved hypothetical protein; Alternative locus ID: PMED4_06051.
       0.567
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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