STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furFerric uptake regulator family; Alternative locus ID: PMED4_06871; Belongs to the Fur family. (150 aa)    
Predicted Functional Partners:
PMM0370
Putative cyanate ABC transporter, substrate binding protein; Alternative locus ID: PMED4_04031.
   
  
 0.850
PMM1637
Possible transcriptional regulator; Alternative locus ID: PMED4_18471.
   
  
 0.772
PMM1032
ABC transporter, substrate binding protein, possibly Mn; Alternative locus ID: PMED4_11751.
  
  
 0.756
PMM0393
Conserved hypothetical protein; Alternative locus ID: PMED4_04341.
   
  
 0.720
PMM0635
Small mechanosensitive ion channel, MscS family; Alternative locus ID: PMED4_06851.
 
    0.604
rpoA
Bacterial RNA polymerase, alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.598
PMM1150
Putative thioredoxin reductase; Alternative locus ID: PMED4_13081.
  
 
 0.570
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Alternative locus ID: PMED4_17221.
  
  
 0.553
tpx
Thioredoxin peroxidase; Alternative locus ID: PMED4_09521.
  
  
 0.549
isiB
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
  
 0.533
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.