STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0671Putative phosphonate ABC transporter; Alternative locus ID: PMED4_07271. (500 aa)    
Predicted Functional Partners:
PMM0672
Putative phosphonate ABC transporter; Alternative locus ID: PMED4_07281.
 
 0.996
PMM0673
Putative phosphonate binding protein for ABC transporter; Alternative locus ID: PMED4_07291.
 
 
 0.992
aspC
Aminotransferases class-I; Possible role in phosphonate metabolism; Alternative locus ID: PMED4_07301.
       0.827
PMM0717
Conserved hypothetical protein; Alternative locus ID: PMED4_07921.
  
     0.774
PMM0670
Conserved hypothetical protein; Alternative locus ID: PMED4_07261.
 
    0.755
PMM0675
Uracil-DNA glycosylase; Alternative locus ID: PMED4_07311.
  
    0.603
gcpE
GcpE protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.552
PMM0677
Carboxyl-terminal processing protease; Alternative locus ID: PMED4_07331; Belongs to the peptidase S41A family.
  
    0.469
selD
Selenide,water dikinase; Alternative locus ID: PMED4_03071.
 
    0.415
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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