Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PMM0728DEAD/DEAH box helicase:Helicase C-terminal domain; Alternative locus ID: PMED4_08051. (825 aa)    
Predicted Functional Partners:
PMM0729
Possible ATP-dependent DNA ligase; Alternative locus ID: PMED4_08061.
 
    0.961
PMM0727
Serine/threonine specific protein phosphatase; Alternative locus ID: PMED4_08041.
 
    0.960
PMM0730
Conserved hypothetical protein; Alternative locus ID: PMED4_08071.
 
    0.958
PMM0731
Possible COMC family; Alternative locus ID: PMED4_08081.
       0.726
FPG
Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase); Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
  
 0.592
PMM0732
Possible Major surface glycoprotein; Alternative locus ID: PMED4_08091.
       0.574
PMM0726
Hypothetical; Alternative locus ID: PMED4_08031.
       0.546
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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