Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PMM0729Possible ATP-dependent DNA ligase; Alternative locus ID: PMED4_08061. (545 aa)    
Predicted Functional Partners:
PMM0730
Conserved hypothetical protein; Alternative locus ID: PMED4_08071.
 
 0.996
PMM0728
DEAD/DEAH box helicase:Helicase C-terminal domain; Alternative locus ID: PMED4_08051.
 
    0.961
PMM0727
Serine/threonine specific protein phosphatase; Alternative locus ID: PMED4_08041.
 
    0.958
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.872
PMM0731
Possible COMC family; Alternative locus ID: PMED4_08081.
       0.726
PMM0732
Possible Major surface glycoprotein; Alternative locus ID: PMED4_08091.
       0.574
PMM0726
Hypothetical; Alternative locus ID: PMED4_08031.
       0.547
xthA
Exodeoxyribonuclease III; Alternative locus ID: PMED4_05331.
  
 
 0.517
holB
DNA polymerase III, delta prime subunit; Alternative locus ID: PMED4_01351.
   
 0.476
lig
ATP-dependent DNA ligase; Alternative locus ID: PMED4_18901.
  
     0.443
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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