STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0729Possible ATP-dependent DNA ligase; Alternative locus ID: PMED4_08061. (545 aa)    
Predicted Functional Partners:
PMM0730
Conserved hypothetical protein; Alternative locus ID: PMED4_08071.
 0.997
PMM0728
DEAD/DEAH box helicase:Helicase C-terminal domain; Alternative locus ID: PMED4_08051.
 
    0.963
PMM0727
Serine/threonine specific protein phosphatase; Alternative locus ID: PMED4_08041.
 
  
 0.961
lig
ATP-dependent DNA ligase; Alternative locus ID: PMED4_18901.
  
 
  0.942
PMM0659
NAD-dependent DNA ligase N-terminus; Alternative locus ID: PMED4_07121.
     
 0.911
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.857
PMM0731
Possible COMC family; Alternative locus ID: PMED4_08081.
       0.740
xthA
Exodeoxyribonuclease III; Alternative locus ID: PMED4_05331.
  
 
 0.707
holB
DNA polymerase III, delta prime subunit; Alternative locus ID: PMED4_01351.
   
 0.649
PMM0732
Possible Major surface glycoprotein; Alternative locus ID: PMED4_08091.
       0.593
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.