STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0761Putative carboxypeptidase; Alternative locus ID: PMED4_08461. (243 aa)    
Predicted Functional Partners:
PMM0427
Putative penicillin binding protein; Alternative locus ID: PMED4_04741.
   
 
 0.906
chlP
Aromatic-ring hydroxylase (flavoprotein monooxygenase); Alternative locus ID: PMED4_08451.
       0.649
typA
Tyrosine binding protein; Alternative locus ID: PMED4_08471.
       0.621
PMM0763
Conserved hypothetical protein; Alternative locus ID: PMED4_08481.
  
    0.569
PMM0764
Possible ABC transporter, ATP binding component; Alternative locus ID: PMED4_08491.
  
    0.535
ccsA
Possible heme transporter; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
 
    0.474
ddlA
D-alanine--D-alanine ligase; Cell wall formation.
 
  
 0.463
PMM0103
Conserved hypothetical protein; Alternative locus ID: PMED4_01091.
  
    0.453
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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