STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
futC,ABC transporter, ATP binding component, possibly iron transporter; Alternative locus ID: PMED4_08891. (352 aa)    
Predicted Functional Partners:
futB,hitB
Putative iron ABC transporter; Alternative locus ID: PMED4_05381.
 
 0.996
futA,sfuA,
Putative iron ABC transporter, substrate binding protein; Alternative locus ID: PMED4_13281.
 
 
 0.992
PMM0913
Possible ABC transporter; Alternative locus ID: PMED4_10241.
 
 
    0.899
PMM0440
Conserved hypothetical protein; Alternative locus ID: PMED4_04871.
  
  
 0.860
PMM0421
Putative ABC transporter, oligopeptides; Alternative locus ID: PMED4_04651.
 
    0.765
hetA
ABC transporter; Alternative locus ID: PMED4_14041.
 
   
0.753
PMM1099
ABC transporter, multidrug efflux family; Alternative locus ID: PMED4_12451.
 
   
0.737
PMM0827
ABC transporter, possibly multidrug efflux; Alternative locus ID: PMED4_09211.
 
   
0.719
nth
Putative endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
    0.659
ycf39
Conserved hypothetical protein; Alternative locus ID: PMED4_08871.
       0.595
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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