STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0824Conserved hypothetical protein; Alternative locus ID: PMED4_09181. (212 aa)    
Predicted Functional Partners:
PMM0821
Conserved hypothetical protein; Alternative locus ID: PMED4_09151.
  
    0.831
rsfS
Domain of unknown function DUF143:Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.831
K8K14.9
Putative protein; Alternative locus ID: PMED4_09161.
       0.828
secE
Putative preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.782
PMM0058
Conserved hypothetical protein; Alternative locus ID: PMED4_00601.
  
    0.778
PMM0573
Conserved hypothetical protein; Alternative locus ID: PMED4_06221.
  
    0.777
som
Possible porin; Alternative locus ID: PMED4_07831; Belongs to the OprB family.
  
    0.777
PMM0239
Conserved hypothetical protein; Alternative locus ID: PMED4_02441.
  
     0.775
PMM0393
Conserved hypothetical protein; Alternative locus ID: PMED4_04341.
  
     0.775
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
    0.775
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.