STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0827ABC transporter, possibly multidrug efflux; Alternative locus ID: PMED4_09211. (606 aa)    
Predicted Functional Partners:
PMM0826
Hypothetical; Alternative locus ID: PMED4_09201.
       0.814
futC,
ABC transporter, ATP binding component, possibly iron transporter; Alternative locus ID: PMED4_08891.
 
   
0.719
tpi,
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
   0.650
PMM0828
S4 domain; Alternative locus ID: PMED4_09221.
  
    0.611
folP
Putative dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.563
PMM0449
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_04961.
 
0.532
PMM0535
Putative short-chain dehydrogenase; Alternative locus ID: PMED4_05841; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.421
PMM1386
Possible permease; Alternative locus ID: PMED4_15811.
 
    0.419
PMM1187
Conserved hypothetical; Alternative locus ID: PMED4_13521.
    
 0.413
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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