Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacB,Putative D-Ala-D-Ala carboxypeptidase 3 (S13) family; Alternative locus ID: PMED4_09961. (323 aa)    
Predicted Functional Partners:
PMM0427
Putative penicillin binding protein; Alternative locus ID: PMED4_04741.
   
 
 0.927
ftsI
Putative peptidoglycan synthetase (pbp transpeptidase domain); Alternative locus ID: PMED4_05671.
   
 
 0.912
PMM0040
Putative penicillin-binding protein; Alternative locus ID: PMED4_00401.
   
 
 0.910
PMM0761
Putative carboxypeptidase; Alternative locus ID: PMED4_08461.
     
 0.905
PMM0886
Conserved hypothetical protein; Alternative locus ID: PMED4_09971.
  
    0.539
nifS
Possible cysteine desulfurase (class-V aminotransferase family); Alternative locus ID: PMED4_09981.
  
    0.539
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.536
pcb
Light-harvesting complex protein; The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystem II and possibly to photosystem I. The Prochlorales pcb genes are not related to higher plant LHCs.
      
 0.498
psbP
Photosystem II oxygen evolving complex protein PsbP; Alternative locus ID: PMED4_12441.
      
 0.493
leuS
Leucyl-tRNA synthetase; Alternative locus ID: PMED4_10001; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.455
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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