STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0913Possible ABC transporter; Alternative locus ID: PMED4_10241. (409 aa)    
Predicted Functional Partners:
PMM0434
Possible ABC transporter, ATP binding protein; Alternative locus ID: PMED4_04811.
 
 0.994
PMM0750
ABC transporter, ATP-binding component; Alternative locus ID: PMED4_08351.
 
 0.978
PMM1139
Possible membrane fusion protein; Alternative locus ID: PMED4_12971; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.942
PMM0372
Putative cyanate ABC transporter; Alternative locus ID: PMED4_04051.
 
 
    0.901
futC,
ABC transporter, ATP binding component, possibly iron transporter; Alternative locus ID: PMED4_08891.
 
 
    0.899
PMM0449
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_04961.
 
 
  
 0.850
pykF
Pyruvate kinase; Alternative locus ID: PMED4_10231; Belongs to the pyruvate kinase family.
  
    0.831
PMM0914
Conserved hypothetical protein; Alternative locus ID: PMED4_10251.
  
    0.802
lspA
Putative lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.802
PMM0916
Conserved hypothetical protein; Alternative locus ID: PMED4_10271.
  
    0.799
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.