STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0944Conserved hypothetical protein; Alternative locus ID: PMED4_10551. (148 aa)    
Predicted Functional Partners:
rps15,
30S Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
    0.823
PMM0296
Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
  
 0.790
psb27
Possible Photosystem II reaction center Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
    0.776
PMM0480
Conserved hypothetical protein; Alternative locus ID: PMED4_05281.
  
    0.775
PMM1185
Conserved hypothetical protein; Alternative locus ID: PMED4_13501.
  
     0.774
rub
Probable rubredoxin; Alternative locus ID: PMED4_03001.
  
   
 0.772
PMM0529
Conserved hypothetical protein; Alternative locus ID: PMED4_05781.
  
    0.771
PMM0680
Conserved hypothetical protein; Alternative locus ID: PMED4_07361.
  
     0.769
psbO
Photosystem II manganese-stabilizing protein; Alternative locus ID: PMED4_02331.
  
    0.768
psb28
Possible Photosystem II reaction center Psb28 protein; Alternative locus ID: PMED4_10371; Belongs to the Psb28 family.
  
    0.765
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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