Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PMM1082Possible Helix-turn-helix; Alternative locus ID: PMED4_12281. (162 aa)    
Predicted Functional Partners:
pgsA
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Alternative locus ID: PMED4_08841; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.667
PMM0962
Possible Vng0271c; Alternative locus ID: PMED4_10741.
   
 
 0.646
mreB
Rod shape determining protein; Alternative locus ID: PMED4_18321.
   
 
 0.646
PMM1083
Possible kinase; Alternative locus ID: PMED4_12291.
       0.603
PMM0257
Molybdenum cofactor biosynthesis protein; Alternative locus ID: PMED4_02621; Belongs to the CinA family.
  
    0.441
cad
Orn/Lys/Arg decarboxylases family 1; Possible assignment; Alternative locus ID: PMED4_12301.
       0.415
PMM1085
Phosphatidate cytidylyltransferase; Alternative locus ID: PMED4_12311; Belongs to the CDS family.
       0.404
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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