Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
recDPossible exodeoxyribonuclease V 67 kD polypeptide; Alternative locus ID: PMED4_12481. (562 aa)    
Predicted Functional Partners:
recB
Possible UvrD/REP helicase subunit B; Alternative locus ID: PMED4_12491.
 
 
 0.991
recC
Possible exodeoxyribonuclease V subunit C 125 kD polypeptide; Alternative locus ID: PMED4_12511.
 
 
 0.984
PMM1104
Conserved hypothetical protein; Alternative locus ID: PMED4_12501.
  
    0.822
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.784
PMM1106
Conserved hypothetical protein; Alternative locus ID: PMED4_12521.
       0.768
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.767
holB
DNA polymerase III, delta prime subunit; Alternative locus ID: PMED4_01351.
   
 
 0.748
uvrD
UvrD/REP helicase; Alternative locus ID: PMED4_03091.
  
 
 0.698
recA
RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 
 0.688
recN
DNA REPAIR PROTEIN RECN, ABC transporter; May be involved in recombinational repair of damaged DNA.
   
  
 0.626
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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