STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recDPossible exodeoxyribonuclease V 67 kD polypeptide; Alternative locus ID: PMED4_12481. (562 aa)    
Predicted Functional Partners:
recC
Possible exodeoxyribonuclease V subunit C 125 kD polypeptide; Alternative locus ID: PMED4_12511.
 
 
 0.991
recB
Possible UvrD/REP helicase subunit B; Alternative locus ID: PMED4_12491.
 
 
 0.990
PMM1104
Conserved hypothetical protein; Alternative locus ID: PMED4_12501.
  
    0.832
holB
DNA polymerase III, delta prime subunit; Alternative locus ID: PMED4_01351.
   
 
 0.787
PMM1106
Conserved hypothetical protein; Alternative locus ID: PMED4_12521.
  
    0.783
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.779
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.760
truB
Putative tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
 
  0.667
PMM1101
Putative ATP-dependent RNA helicase; Alternative locus ID: PMED4_12471; Belongs to the DEAD box helicase family.
  
  
 0.654
recN
DNA REPAIR PROTEIN RECN, ABC transporter; May be involved in recombinational repair of damaged DNA.
   
  
 0.649
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.