STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recCPossible exodeoxyribonuclease V subunit C 125 kD polypeptide; Alternative locus ID: PMED4_12511. (1057 aa)    
Predicted Functional Partners:
recB
Possible UvrD/REP helicase subunit B; Alternative locus ID: PMED4_12491.
 
 
 0.992
recD
Possible exodeoxyribonuclease V 67 kD polypeptide; Alternative locus ID: PMED4_12481.
 
 
 0.991
PMM1104
Conserved hypothetical protein; Alternative locus ID: PMED4_12501.
  
    0.825
PMM1106
Conserved hypothetical protein; Alternative locus ID: PMED4_12521.
  
    0.798
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.796
recG
ATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
   
  
 0.773
recO
Possible Recombination protein O (RecO); Involved in DNA repair and RecF pathway recombination.
   
  
 0.647
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
  
 0.642
recN
DNA REPAIR PROTEIN RECN, ABC transporter; May be involved in recombinational repair of damaged DNA.
   
  
 0.642
PMM1108
Phospholipid and glycerol acyltransferase (from 'motifs_6.msf'); Alternative locus ID: PMED4_12541.
       0.598
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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