Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
som-2Possible porin; Alternative locus ID: PMED4_12651. (380 aa)    
Predicted Functional Partners:
PMM0538
Conserved hypothetical protein; Alternative locus ID: PMED4_05871.
      
 0.779
ppa
Putative inorganic pyrophosphatase; Alternative locus ID: PMED4_05431.
      
 0.763
som-3
Possible porin; Alternative locus ID: PMED4_12671.
  
  
0.608
argJ
ArgJ family; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
      
 0.556
PMM1120
Sulfotransferase:TPR repeat; Alternative locus ID: PMED4_12661.
   
   0.549
amt1
Ammonium transporter family; Alternative locus ID: PMED4_02681.
   
  
 0.498
pgm
Phosphoglucomutase; Alternative locus ID: PMED4_00791.
      
 0.491
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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