STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1167Macrophage migration inhibitory factor family; Alternative locus ID: PMED4_13311. (110 aa)    
Predicted Functional Partners:
aspC
Aminotransferases class-I; Possible role in phosphonate metabolism; Alternative locus ID: PMED4_07301.
  
  
  0.911
hisC
Aminotransferases class-I; Conserved hypothetical assignment; Alternative locus ID: PMED4_01921.
    
  0.900
PMM1971
Conserved hypothetical protein; Alternative locus ID: PMED4_13321.
       0.828
PMM1166
Conserved hypothetical protein; Alternative locus ID: PMED4_13301.
       0.767
F4P13.20
Conserved hypothetical protein; Alternative locus ID: PMED4_13331.
       0.539
glyQ
Glycyl-tRNA synthetase alpha subunit; Alternative locus ID: PMED4_13291.
  
    0.518
PMM1169
Hypothetical; Alternative locus ID: PMED4_13341.
  
    0.516
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.