STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1177Conserved hypothetical protein; Alternative locus ID: PMED4_13421. (601 aa)    
Predicted Functional Partners:
PMM1178
Glycosyl transferases group 1; Alternative locus ID: PMED4_13431.
 
  
 0.942
PMM1522
Glycosyl transferase, family 2; Alternative locus ID: PMED4_17321.
 
  
 0.778
PMM1179
Putative SMR family transporter, possible pecM homologue; Alternative locus ID: PMED4_13441.
  
    0.760
PMM1496
Dolichyl-phosphate-mannose-protein mannosyltransferase; Alternative locus ID: PMED4_17061.
  
    0.755
sppA
Signal peptide peptidase SppA (protease IV); Alternative locus ID: PMED4_13451.
       0.610
tyrA
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
       0.610
lpxB
Lipid-A-disaccharide synthetase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.599
PMM0488
Conserved hypothetical protein; Alternative locus ID: PMED4_05371.
 
  
 0.596
PMM1199
Conserved hypothetical protein; Alternative locus ID: PMED4_13641.
 
  
 0.587
lpxC
UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
  
  
 0.550
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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