STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1202Possible nucleoside-diphosphate-sugar epimerase; Alternative locus ID: PMED4_13671. (284 aa)    
Predicted Functional Partners:
PMM1201
Putative CDP-tyvelose-2-epimerase (RfbE); Alternative locus ID: PMED4_13661.
 
  
 0.920
rfbG
CDP-glucose 4,6-dehydratase; Alternative locus ID: PMED4_13681.
 
    0.833
galE
UDP-glucose-4-epimerase; Alternative locus ID: PMED4_13741; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.800
ddhA,
Glucose-1-phosphate cytidylyltransferase; Alternative locus ID: PMED4_13691.
  
   0.787
PMM1257
Possible dTDP-glucose 4,6-dehydratase; Alternative locus ID: PMED4_14231.
  
  
 0.718
PMM1205
NDP-hexose 3,4-dehydratase; Alternative locus ID: PMED4_13701; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.604
PMM1200
Glycosyl transferase, family 2; Alternative locus ID: PMED4_13651.
  
    0.527
rps19,
30S Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.494
rps14,
30S Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.488
rps17,
30S Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.463
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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