STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEUDP-glucose-4-epimerase; Alternative locus ID: PMED4_13741; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (363 aa)    
Predicted Functional Partners:
ugd
UDP-glucose 6-dehydrogenase; Alternative locus ID: PMED4_14271; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.942
sqdB
Sulfolipid (UDP-sulfoquinovose) biosynthesis protein; Alternative locus ID: PMED4_18751.
   
 0.925
PMM1202
Possible nucleoside-diphosphate-sugar epimerase; Alternative locus ID: PMED4_13671.
 
 
 0.800
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.703
cugP
Putative sugar-phosphate nucleotidyl transferase; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.
 
  
 0.657
PMM1210
Putative nucleotide sugar epimerase; Alternative locus ID: PMED4_13751.
  
 
0.640
manC
GDP-mannose pyrophosphorylase; Alternative locus ID: PMED4_13611; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.591
plsY
Conserved hypothetical protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
  
  
 0.549
PMM1201
Putative CDP-tyvelose-2-epimerase (RfbE); Alternative locus ID: PMED4_13661.
 
  
0.540
PMM1225
Conserved hypothetical protein; Alternative locus ID: PMED4_13901.
  
  
 0.537
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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