STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1234Zinc-containing alcohol dehydrogenase superfamily; Alternative locus ID: PMED4_13991. (343 aa)    
Predicted Functional Partners:
PMM0331
Putative aldehyde dehydrogenase; Alternative locus ID: PMED4_03381; Belongs to the aldehyde dehydrogenase family.
 
 0.942
PMM0959
Conserved hypothetical protein; Alternative locus ID: PMED4_10711.
      
 0.850
PMM1235
Possible N-terminal fragment of transketolase; Alternative locus ID: PMED4_14001.
       0.786
PMM1236
Unknown; Alternative locus ID: PMED4_14011.
       0.786
PMM1238
Conserved hypothetical protein; Alternative locus ID: PMED4_14031.
  
  
 0.785
PMM1237
Conserved hypothetical protein; Alternative locus ID: PMED4_14021.
  
  
 0.783
PMM1230
Dehydrogenase E1 component beta subunit; Alternative locus ID: PMED4_13951.
  
  
 0.751
PMM1229
Dehydrogenase, E1 component; Alternative locus ID: PMED4_13941.
  
  
 0.750
PMM1232
Methyltransferase; Alternative locus ID: PMED4_13971.
       0.732
rfbD
Putative dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.732
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.