STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1259Pyridoxal-phosphate-dependent aminotransferase; Alternative locus ID: PMED4_14251; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)    
Predicted Functional Partners:
PMM1258
Pyridoxal-phosphate-dependent aminotransferase; Alternative locus ID: PMED4_14241; Belongs to the DegT/DnrJ/EryC1 family.
 
   
0.823
PMM0273
Probable oxidoreductase; Alternative locus ID: PMED4_02781.
 
  
 0.799
PMM1257
Possible dTDP-glucose 4,6-dehydratase; Alternative locus ID: PMED4_14231.
  
  
 0.684
PMM1260
Nucleoside-diphosphate-sugar epimerase; Alternative locus ID: PMED4_14261.
 
    0.618
ugd
UDP-glucose 6-dehydrogenase; Alternative locus ID: PMED4_14271; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.615
manC
GDP-mannose pyrophosphorylase; Alternative locus ID: PMED4_13611; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.526
PMM1252
Possible acetyltransferase; Alternative locus ID: PMED4_14181.
  
  
 0.413
PMM1201
Putative CDP-tyvelose-2-epimerase (RfbE); Alternative locus ID: PMED4_13661.
   
  
 0.409
PMM1701
Putative chloride channel; Alternative locus ID: PMED4_19121.
   
  
 0.404
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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