STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgXPutative isoamylase; Alternative locus ID: PMED4_14901; Belongs to the glycosyl hydrolase 13 family. (677 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
0.998
malQ
Putative 4-alpha-glucanotransferase; Alternative locus ID: PMED4_12271.
 
 0.978
PMM1601
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 
 0.972
glgC
ADP-glucose pyrophosphorylase; Alternative locus ID: PMED4_08541; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
 0.921
glgA
Putative ADPglucose--glucosyltransferase (GlgA); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.914
PMM1065
Conserved hypothetical protein; Alternative locus ID: PMED4_12111; Belongs to the glycosyl hydrolase 57 family.
   
 
  0.900
pgm
Phosphoglucomutase; Alternative locus ID: PMED4_00791.
  
 0.822
PMM0961
Glycoside hydrolase family 13; Alternative locus ID: PMED4_10731.
 
  
 0.657
PMM1323
Putative GPH family sugar transporter; Alternative locus ID: PMED4_14911.
  
    0.589
PMM1324
Possible transporter, membrane component; Alternative locus ID: PMED4_14921.
  
    0.589
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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