Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
petF-3Ferredoxin; Alternative locus ID: PMED4_16581. (108 aa)    
Predicted Functional Partners:
petE
Plastocyanin; Alternative locus ID: PMED4_06301.
   
 
 0.983
petH
ferredoxin-NADP oxidoreductase (FNR); Alternative locus ID: PMED4_12211.
    
 0.976
petF
Ferredoxin, petF-like protein; Alternative locus ID: PMED4_10091.
  
  
 
0.914
petF-2
Ferredoxin; Alternative locus ID: PMED4_15201.
  
 
 
0.911
PMM1448
Conserved hypothetical protein; Alternative locus ID: PMED4_16571.
  
    0.826
PMM1447
Conserved hypothetical protein; Alternative locus ID: PMED4_16561.
  
    0.816
atpC
ATP synthase gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
  
    0.806
atpA
H+-transporting ATP synthase alpha-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
   0.772
pcyA
Ferredoxin-dependent biliverdin reductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin; Belongs to the HY2 family.
   
 
 0.767
ho1
Heme oxygenase; Alternative locus ID: PMED4_18041.
    
 
 0.720
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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