STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hli3Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219; Alternative locus ID: PMED4_16921. (50 aa)    
Predicted Functional Partners:
PMM1480
Conserved hypothetical protein; Alternative locus ID: PMED4_16891.
 
    0.883
ndhL
NADH dehydrogenase subunit NdhL (ndhL); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
    0.774
PMM0845
Conserved hypothetical protein; Alternative locus ID: PMED4_09401.
  
     0.773
PMM0239
Conserved hypothetical protein; Alternative locus ID: PMED4_02441.
  
     0.772
PMM0588
Conserved hypothetical protein; Alternative locus ID: PMED4_06371.
  
     0.771
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
     0.770
PMM0824
Conserved hypothetical protein; Alternative locus ID: PMED4_09181.
  
     0.768
PMM1308
Conserved hypothetical protein; Alternative locus ID: PMED4_14751.
  
     0.767
PMM0063
Conserved hypothetical protein; Alternative locus ID: PMED4_00651.
  
    0.764
rlmN
Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
  
    0.761
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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