Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PMM1517Conserved hypothetical protein; Alternative locus ID: PMED4_17271. (299 aa)    
Predicted Functional Partners:
PMM0824
Conserved hypothetical protein; Alternative locus ID: PMED4_09181.
  
     0.775
PMM0239
Conserved hypothetical protein; Alternative locus ID: PMED4_02441.
  
     0.774
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
     0.773
secE
Putative preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.770
PMM0393
Conserved hypothetical protein; Alternative locus ID: PMED4_04341.
  
     0.770
som
Possible porin; Alternative locus ID: PMED4_07831; Belongs to the OprB family.
 
     0.769
PMM0196
Conserved hypothetical protein; Alternative locus ID: PMED4_02021.
  
     0.765
PMM1326
Conserved hypothetical protein; Alternative locus ID: PMED4_14941.
  
    0.764
PMM0249
Conserved hypothetical protein; Alternative locus ID: PMED4_02541.
  
    0.762
PMM0573
Conserved hypothetical protein; Alternative locus ID: PMED4_06221.
  
     0.756
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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