Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpl31,50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (86 aa)    
Predicted Functional Partners:
rps9,
30S ribosomal protein S9; Alternative locus ID: PMED4_17411; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.994
rpl13,
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.993
rps15,
30S Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.989
rpl28,
50S ribosomal protein L28; Alternative locus ID: PMED4_10131; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.981
rpl33,
50S Ribosomal protein L33; Alternative locus ID: PMED4_09801; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.980
rpsT,rps20
30s Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.979
rpl32,
50S ribosomal protein L32; Alternative locus ID: PMED4_09491; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.978
rps16,
30S Ribosomal protein S16; Alternative locus ID: PMED4_14511; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.978
rpsD,rps4
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.976
rpl19
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.976
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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