Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PMM1563Conserved hypothetical protein; Alternative locus ID: PMED4_17731. (81 aa)    
Predicted Functional Partners:
PMM1564
Conserved hypothetical protein; Alternative locus ID: PMED4_17741.
 
     0.798
secE
Putative preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.776
PMM0824
Conserved hypothetical protein; Alternative locus ID: PMED4_09181.
  
    0.774
PMM1595
Conserved hypothetical protein; Alternative locus ID: PMED4_18051.
  
     0.773
PMM0124
Conserved hypothetical protein in cyanobacteria; Alternative locus ID: PMED4_01301; Belongs to the UPF0367 family.
  
     0.771
PMM1170
Conserved hypothetical protein; Alternative locus ID: PMED4_13351.
  
     0.771
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
     0.770
rpoZ
Putative DNA-directed RNA polymerase (omega chain); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.769
PMM0249
Conserved hypothetical protein; Alternative locus ID: PMED4_02541.
  
     0.767
PMM0139
Conserved hypothetical protein; Alternative locus ID: PMED4_01451.
  
    0.766
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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