STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM1670Conserved hypothetical protein; Alternative locus ID: PMED4_18801. (429 aa)    
Predicted Functional Partners:
PMM1671
Conserved hypothetical protein; Alternative locus ID: PMED4_18811.
  
    0.834
gcsH,
Putative Glycine cleavage H-protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.828
cad
Orn/Lys/Arg decarboxylases family 1; Possible assignment; Alternative locus ID: PMED4_12301.
 
  
 0.763
ddlA
D-alanine--D-alanine ligase; Cell wall formation.
 
    0.727
gcvP
Glycine cleavage system P-protein; Alternative locus ID: PMED4_18781; Belongs to the GcvP family.
       0.718
sepF
Conserved hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
 
     0.695
des9
Fatty acid desaturase, type 1; Alternative locus ID: PMED4_18821.
  
    0.617
PMM1667
Conserved hypothetical protein; Alternative locus ID: PMED4_18771.
       0.534
rpl9,
50S ribosomal protein L9; Binds to the 23S rRNA.
       0.524
mrnC
Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.438
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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