Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
des9Fatty acid desaturase, type 1; Alternative locus ID: PMED4_18821. (328 aa)    
Predicted Functional Partners:
rpl9,
50S ribosomal protein L9; Binds to the 23S rRNA.
 
    0.807
PMM1670
Conserved hypothetical protein; Alternative locus ID: PMED4_18801.
       0.647
dnaB
DnaB replicative helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.638
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.624
PMM1671
Conserved hypothetical protein; Alternative locus ID: PMED4_18811.
  
    0.584
gcsH,
Putative Glycine cleavage H-protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
  
    0.571
PMM1676
Conserved hypothetical protein; Alternative locus ID: PMED4_18861.
       0.534
PMM1382
Fatty acid desaturase, type 2; Alternative locus ID: PMED4_15691.
   
 
 0.521
gcvP
Glycine cleavage system P-protein; Alternative locus ID: PMED4_18781; Belongs to the GcvP family.
       0.497
PMM1307
Conserved hypothetical protein; Alternative locus ID: PMED4_14741.
   
    0.412
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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