STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtRBeta carotene hydroxylase. (260 aa)    
Predicted Functional Partners:
crtL1
Putative lycopene beta cyclase; Alternative locus ID: PMED4_12101.
   
 
 0.901
pds,crtD
Phytoene desaturase; Alternative locus ID: PMED4_01501.
  
   
 0.881
crtB,pys
Squalene and phytoene synthases; Alternative locus ID: PMED4_01491.
  
  
 0.797
PMM0845
Conserved hypothetical protein; Alternative locus ID: PMED4_09401.
  
     0.770
PMM0239
Conserved hypothetical protein; Alternative locus ID: PMED4_02441.
  
     0.765
PMM0824
Conserved hypothetical protein; Alternative locus ID: PMED4_09181.
  
     0.761
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
     0.753
PMM1325
Conserved hypothetical protein; Alternative locus ID: PMED4_14931.
  
     0.753
som
Possible porin; Alternative locus ID: PMED4_07831; Belongs to the OprB family.
  
     0.745
PMM0895
Conserved hypothetical protein; Alternative locus ID: PMED4_10061.
  
     0.744
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.