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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ57833.1Exoribonuclease R/ribonuclease II; Alternative locus ID: NATL2_09611. (424 aa)    
Predicted Functional Partners:
AAZ58647.1
3'-5' exonuclease; Alternative locus ID: NATL2_19791.
   
 
 0.777
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
   0.757
AAZ59140.1
NUDIX hydrolase; Alternative locus ID: NATL2_03461.
   
 0.714
AAZ57852.1
RNA binding S1:Cold shock protein; Alternative locus ID: NATL2_09891; Belongs to the RNR ribonuclease family.
  
     0.713
rpmG
LSU ribosomal protein L33P; Alternative locus ID: NATL2_09591; Belongs to the bacterial ribosomal protein bL33 family.
       0.672
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.626
pheT
phenylalanyl-tRNA synthetase beta subunit; Alternative locus ID: NATL2_09581; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.600
AAZ57835.1
Hypothetical protein; Alternative locus ID: NATL2_09631.
       0.576
AAZ58356.1
tRNA/rRNA methyltransferase (SpoU); Alternative locus ID: NATL2_16601; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
   0.486
AAZ57754.1
RNA methyltransferase TrmH, group 3; Alternative locus ID: NATL2_08781; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
   0.416
Your Current Organism:
Prochlorococcus marinus NATL2A
NCBI taxonomy Id: 59920
Other names: P. marinus str. NATL2A, Prochlorococcus marinus str. NATL2A, Prochlorococcus sp. NATL2A
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