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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ58419.1RNA-binding S4; Alternative locus ID: NATL2_17271. (262 aa)    
Predicted Functional Partners:
psbB
Photosystem II PsbB protein (CP47); One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
    
   0.670
rpmG
LSU ribosomal protein L33P; Alternative locus ID: NATL2_09591; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.617
rplQ
LSU ribosomal protein L17P; Alternative locus ID: NATL2_19271.
  
 
   0.617
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
   
   0.611
AAZ58418.1
Uncharacterized conserved membrane protein; Alternative locus ID: NATL2_17261.
       0.597
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.590
rpmF
LSU ribosomal protein L32P; Alternative locus ID: NATL2_09821; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.589
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.589
AAZ58912.1
YGGT family, conserved hypothetical protein integral membrane protein; Alternative locus ID: NATL2_01061.
 
  
 0.567
AAZ58047.1
Protein chain release factor B; Alternative locus ID: NATL2_12741.
    
   0.565
Your Current Organism:
Prochlorococcus marinus NATL2A
NCBI taxonomy Id: 59920
Other names: P. marinus str. NATL2A, Prochlorococcus marinus str. NATL2A, Prochlorococcus sp. NATL2A
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