STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU92_0544LSU ribosomal protein L5p (L11e); Alternative locus ID: PMIT9107_1860. (179 aa)    
Predicted Functional Partners:
EU92_0079
LSU ribosomal protein L20p; Alternative locus ID: PMIT9107_1457.
   
 
 0.999
EU92_0090
LSU ribosomal protein L9p; Alternative locus ID: PMIT9107_1468.
   
 
 0.999
EU92_0124
SSU ribosomal protein S6p; Alternative locus ID: PMIT9107_1502.
   
 
 0.999
EU92_0239
SSU ribosomal protein S14p (S29e); Alternative locus ID: PMIT9107_1614.
  
 0.999
EU92_0361
LSU ribosomal protein L21p; Alternative locus ID: PMIT9107_1079.
   
 
 0.999
EU92_0423
SSU ribosomal protein S16p; Alternative locus ID: PMIT9107_1141.
  
 
 0.999
EU92_0505
SSU ribosomal protein S10p (S20e); Alternative locus ID: PMIT9107_1821.
 
 0.999
EU92_0506
Translation elongation factor Tu; Alternative locus ID: PMIT9107_1822.
  
 
 0.999
EU92_0507
Translation elongation factor G; Alternative locus ID: PMIT9107_1823.
  
 0.999
EU92_0508
SSU ribosomal protein S7p (S5e); Alternative locus ID: PMIT9107_1824.
  
 0.999
Your Current Organism:
Prochlorococcus marinus MIT9107
NCBI taxonomy Id: 59921
Other names: P. marinus str. MIT 9107, Prochlorococcus marinus str. MIT 9107, Prochlorococcus sp. MIT 9107, Prochlorococcus sp. MIT9107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.