STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacAUncharacterized conserved protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (293 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl pyrophosphate synthetase (UPPS); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
 0.848
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.801
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
       0.771
ABM77746.1
COG1054 Predicted sulfurtransferase [General function prediction only]; Belongs to the UPF0176 family.
       0.771
mutS2
Putative DNA mismatch repair protein MutS family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.616
ABM77741.1
Putative ribosomal-protein-alanine acetyltransferase; COG456 Acetyltransferases [General function prediction only].
       0.614
ABM77682.1
COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only].
 
  
 0.438
clpC
ClpC; COG542 ATPases with chaperone activity, ATP-binding subunit [Posttranslational modification, protein turnover, chaperones]; Belongs to the ClpA/ClpB family.
       0.430
gldA
COG371 Glycerol dehydrogenase and related enzymes [Energy production and conversion].
       0.428
todF
Alpha/beta hydrolase fold; COG596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].
       0.422
Your Current Organism:
Prochlorococcus marinus MIT9303
NCBI taxonomy Id: 59922
Other names: P. marinus str. MIT 9303, Prochlorococcus marinus str. MIT 9303, Prochlorococcus sp. MIT 9303, Prochlorococcus sp. MIT9303
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