STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EV02_0079Putative COMC family; Alternative locus ID: PSB_1476. (137 aa)    
Predicted Functional Partners:
EV02_0075
Hypothetical protein; Alternative locus ID: PSB_1472; FIG006285: hypothetical protein.
       0.743
EV02_0076
Hypothetical protein; Alternative locus ID: PSB_1473; FIG003033: Helicase domain protein.
       0.743
EV02_0077
ATP-dependent DNA ligase LigC; Alternative locus ID: PSB_1474.
       0.743
EV02_0078
mRNA 3-end processing factor; Alternative locus ID: PSB_1475.
       0.743
EV02_0080
Putative Major surface glycoprotein; Alternative locus ID: PSB_1477.
       0.640
EV02_0074
Hypothetical protein; Alternative locus ID: PSB_1471; FIG00940350: hypothetical protein.
       0.508
EV02_0082
Putative Helix-turn-helix protein; Alternative locus ID: PSB_1479; copG family.
       0.412
Your Current Organism:
Prochlorococcus marinus SB
NCBI taxonomy Id: 59926
Other names: P. marinus str. SB, Prochlorococcus marinus str. RCC295, Prochlorococcus marinus str. SB, Prochlorococcus sp. RCC295, Prochlorococcus sp. SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.