STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EV02_0806Glycosyltransferase; Alternative locus ID: PSB_0274. (385 aa)    
Predicted Functional Partners:
EV02_1740
Mannose-1-phosphate guanylyltransferase (GDP); Alternative locus ID: PSB_1209; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.760
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.718
EV02_0150
Thioredoxin family protein; Alternative locus ID: PSB_1547.
  
     0.706
EV02_0710
Hypothetical protein; Alternative locus ID: PSB_0178; FIG00941087: hypothetical protein.
  
     0.687
EV02_0800
Hypothetical protein; Alternative locus ID: PSB_0268; FIG00940799: hypothetical protein.
 
     0.681
EV02_0521
Hypothetical protein; Alternative locus ID: PSB_1918; FIG00940351: hypothetical protein.
  
     0.662
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.659
EV02_0804
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.659
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.659
EV02_1143
Potassium uptake protein TrkH; Alternative locus ID: PSB_0611.
     
 0.635
Your Current Organism:
Prochlorococcus marinus SB
NCBI taxonomy Id: 59926
Other names: P. marinus str. SB, Prochlorococcus marinus str. RCC295, Prochlorococcus marinus str. SB, Prochlorococcus sp. RCC295, Prochlorococcus sp. SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.