STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR17961.1Carboxyl-terminal processing protease; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (450 aa)    
Predicted Functional Partners:
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.692
EAR17959.1
Phage SPO1 DNA polymerase-related protein; COG1573 Uracil-DNA glycosylase.
  
    0.672
EAR17958.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.571
EAR19913.1
Hypothetical protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
  
 0.536
EAR17957.1
Aminotransferase class-I; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.529
pheT
phenylalanyl-tRNA synthetase, beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.525
secD
Preprotein translocase subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
  0.517
EAR17954.1
COG3639 ABC-type phosphate/phosphonate transport system, permease component.
       0.436
EAR17955.1
ATPase; COG3638 ABC-type phosphate/phosphonate transport system, ATPase component.
       0.436
EAR17956.1
Putative phosphonate binding protein for ABC transporter; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
       0.436
Your Current Organism:
Synechococcus sp. WH 7805
NCBI taxonomy Id: 59931
Other names: S. sp. WH 7805, Synechococcus WH7805, Synechococcus sp. (strain WH7805), Synechococcus sp. WH7805
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.