STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR17724.1Pili biogenesis protein; COG1459 Type II secretory pathway, component PulF. (417 aa)    
Predicted Functional Partners:
EAR17722.1
General secretion pathway protein E; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.999
EAR17723.1
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.979
EAR18331.1
COG4970 Tfp pilus assembly protein FimT.
  
  
 0.962
EAR19979.1
Twitching motility protein; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.908
EAR18814.1
COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.906
EAR17344.1
Hypothetical protein.
   
 
 0.874
EAR17346.1
Hypothetical protein.
   
 
 0.874
EAR19823.1
COG1555 DNA uptake protein and related DNA-binding proteins.
  
  
 0.748
EAR17347.1
Possible general (type II) secretion pathway protein D precursor; COG4796 Type II secretory pathway, component HofQ; Belongs to the bacterial secretin family.
 
  
 0.703
EAR18298.1
COG0658 Predicted membrane metal-binding protein.
   
  
 0.566
Your Current Organism:
Synechococcus sp. WH 7805
NCBI taxonomy Id: 59931
Other names: S. sp. WH 7805, Synechococcus WH7805, Synechococcus sp. (strain WH7805), Synechococcus sp. WH7805
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