STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR17344.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
EAR17346.1
Hypothetical protein.
  
 
 0.972
EAR17722.1
General secretion pathway protein E; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
   
 
 0.874
EAR17724.1
Pili biogenesis protein; COG1459 Type II secretory pathway, component PulF.
   
 
 0.874
EAR17345.1
Hypothetical protein.
       0.786
EAR17347.1
Possible general (type II) secretion pathway protein D precursor; COG4796 Type II secretory pathway, component HofQ; Belongs to the bacterial secretin family.
  
  
 0.660
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.641
rnhA
Possible ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.516
EAR18814.1
COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
  
  
 0.403
Your Current Organism:
Synechococcus sp. WH 7805
NCBI taxonomy Id: 59931
Other names: S. sp. WH 7805, Synechococcus WH7805, Synechococcus sp. (strain WH7805), Synechococcus sp. WH7805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.