Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPLAN_008ABC transporter, ATP-binding protein; COG1137. (245 aa)    
Predicted Functional Partners:
BPLAN_247
Conserved hypothetical protein; COG0343.
 
 
 0.998
BPLAN_316
Conserved hypothetical protein; COG0795.
 
 
 0.998
BPLAN_007
Thiamine pyrophosphokinase; COG1564; Protein involved in thiamin metabolic process.
       0.781
BPLAN_013
Conserved hypothetical protein; COG1452.
  
 
 0.711
BPLAN_015
Conserved hypothetical protein; COG1452.
  
 
 0.711
BPLAN_546
Outer membrane protein; COG4775.
 
  
 0.707
ccmC
Cytochrome c assembly protein; COG0755.
    
 0.651
BPLAN_009
Putative exported peptidyl-prolyl cis-trans isomerase; COG0760.
 
     0.617
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.
 
  
 0.603
BPLAN_010
ABC transporter, ATP-binding/permease protein; COG1132; Protein involved in lipid transport.
    
  0.597
Your Current Organism:
Blattabacterium sp. BPLAN
NCBI taxonomy Id: 600809
Other names: B. sp. (Periplaneta americana) str. BPLAN, Blattabacterium sp. (Periplaneta americana) str. BPLAN, Blattabacterium sp. (Periplaneta americana) strain BPLAN
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