STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HppD4-hydroxyphenylpyruvate dioxygenase. (364 aa)    
Predicted Functional Partners:
SDX40590.1
Homogentisate 1,2-dioxygenase.
 
 0.997
SDW79057.1
Aspartate aminotransferase.
  
 
 0.942
SDX09129.1
Aromatic amino acid aminotransferase apoenzyme.
  
 
 0.942
SDW84280.1
Aspartate aminotransferase.
   
 
 0.912
SDW12675.1
Histidinol-phosphate aminotransferase.
    
 0.908
hisC
Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.908
SDX07092.1
D-alanine transaminase.
   
 
 0.903
SDW70373.1
Uncharacterized oxidoreductase; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.902
SDW48987.1
Amidase.
  
 
  0.812
FahA
Fumarylacetoacetate hydrolase.
 
  
 0.777
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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