STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdHCarnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (491 aa)    
Predicted Functional Partners:
SDW11733.1
Uncharacterized conserved protein, DUF849 family.
 
  
 0.959
SDW11695.1
Apolipoprotein D and lipocalin family protein.
 
     0.861
SDW17995.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.789
SDW11599.1
EamA-like transporter family protein.
       0.785
PcaF
Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.776
SDW12628.1
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.698
SDW02524.1
methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.698
SDW52530.1
methylthioacryloyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.698
SDW72586.1
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.698
SDX35772.1
crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.698
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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